Living Liquid Crystals

Collective motion of self-propelled organisms or synthetic particles often termed active fluid has attracted enormous attention in broad scientific community because of it fundamentally non-equilibrium nature. Energy input and interactions among the moving units and the medium lead to complex dynamics. Here we introduce a new class of active matter, living liquid crystals (LLCs) that combine living swimming bacteria with a lyotropic liquid crystal. The physical properties of LLCs can be controlled by the amount of oxygen available to bacteria, by concentration of ingredients, or by temperature. Our studies reveal a wealth of new intriguing dynamic phenomena, caused by the coupling between the activity-triggered flow and long-range orientational order of the medium. Among these are (a) non-linear trajectories of bacterial motion guided by non-uniform director, (b) local melting of the liquid crystal caused by the bacteria-produced shear flows, (c) activity-triggered transition from a non-flowing uniform state into a flowing one-dimensional periodic pattern and its evolution into a turbulent array of topological defects, (d) birefringence-enabled visualization of microflow generated by the nanometers-thick bacterial flagella. Unlike their isotropic counterpart, the LLCs show collective dynamic effects at very low volume fraction of bacteria, on the order of 0.2%. Our work suggests an unorthodox design concept to control and manipulate the dynamic behavior of soft active matter and opens the door for potential biosensing and biomedical applications.Comment: 32 pages, 8 figures, Supporting Information include

Model of coarsening and vortex formation in vibrated granular rods

Neicu and Kudrolli observed experimentally spontaneous formation of the long-range orientational order and large-scale vortices in a system of vibrated macroscopic rods. We propose a phenomenological theory of this phenomenon, based on a coupled system of equations for local rods density and tilt. The density evolution is described by modified Cahn-Hilliard equation, while the tilt is described by the Ginzburg-Landau type equation. Our analysis shows that, in accordance to the Cahn-Hilliard dynamics, the islands of the ordered phase appear spontaneously and grow due to coarsening. The generic vortex solutions of the Ginzburg-Landau equation for the tilt correspond to the vortical motion of the rods around the cores which are located near the centers of the islands.Comment: 4 pages, 5 figures, submitted to Phys. Rev. Let

A particle-field representation unifies paradigms in active matter

Active matter research focuses on the emergent behavior among interacting self-propelled particles. Unification of seemingly disconnected paradigms -- active phase-separation of repulsive discs and collective motion of self-propelled rods -- is a major challenge in contemporary active matter. Inspired by the quanto-mechanical wave-particle duality, we develop an approach based on the representation of active particles by smoothed continuum fields. On the basis of the collision kinetics, we demonstrate analytically and numerically how nonequilibrium stresses acting among self-driven, anisotropic objects hinder the formation of phase-separated states as observed for self-propelled discs and facilitate the emergence of orientational order. Besides particle shape, the rigidity of self-propelled objects controlling the symmetry of emergent ordered states is as a crucial parameter: impenetrable, anisotropic rods are found to form polar, moving clusters, whereas large-scale nematic structures emerge for soft rods, notably separated by a bistable coexistence regime. These results indicate that the symmetry of the ordered state is not dictated by the symmetry of the interaction potential but is rather a dynamical, emergent property of active systems. This unifying theoretical framework can represent a variety of active systems: living cell tissues, bacterial colonies, cytoskeletal extracts as well as shaken granular media.Comment: 14 pages, 8 figure

Suppression of bacterial rheotaxis in wavy channels

Controlling the swimming behavior of bacteria is crucial, for example, to prevent contamination of ducts and catheters. We show the bacteria modeled by deformable microswimmers can accumulate in flows through straight microchannels either in their center or on previously unknown attractors near the channel walls. We predict a novel resonance effect for semiflexible microswimmers in flows through wavy microchannels. As a result, microswimmers can be deflected in a controlled manner so that they swim in modulated channels distributed over the channel cross-section rather than localized near the wall or the channel center. Thus, depending on the flow amplitude, both upstream orientation of swimmers and their accumulation at the boundaries which can lead to surface rheotaxis are suppressed. Our results suggest new strategies for controlling the behavior of live and synthetic swimmers in microchannels